psite_annotation.addTurnoverRates

psite_annotation.addTurnoverRates(df, turnoverFile)

Annotate pandas dataframe with PTM turnover behavior.

Adds column regarding the PTM turnover behavior.

Adds the following annotation columns to dataframe:

  • ‘PTM Turnover’ = rate of turnover for the modification sites according to Jana’s PTM Turnover data

Example

df = pa.addTurnoverRates(df, pa.turnoverFile)
Required columns:

Modified sequence

Parameters:

  • df (DataFrame) – pandas dataframe with ‘Modified sequence’ column

  • turnoverFile (str) – comma separated file with mapping from phosphosites to turnover information

Returns:

annotated dataframe

Return type:

pd.DataFrame